CloneSet400


Clone Mass	Clones in CloneSet	Parameter Count	Clone Similarity	Syntax Category [Sequence Length]
17	2	2	0.976	compound_stmt

Clone Abstraction

Parameter Bindings

Clone Instance (Click to see clone)	Line Count	Source Line	Source File
1	17	1032	Bio/Seq.py
2	17	1050	Bio/Seq.py

Clone Instance
1

Line Count
17

Source Line
1032

Source File

Bio/Seq.py

    def transcribe(self): 
        """Returns unknown RNA sequence from an unknown DNA sequence.

        >>> my_dna = UnknownSeq(10, character="N")
        >>> my_dna
        UnknownSeq(10, alphabet = Alphabet(), character = 'N')
        >>> print my_dna
        NNNNNNNNNN
        >>> my_rna = my_dna.transcribe()
        >>> my_rna
        UnknownSeq(10, alphabet = RNAAlphabet(), character = 'N')
        >>> print my_rna
        NNNNNNNNNN
        """ 
        #Offload the alphabet stuff
        s = Seq(self._character,self.alphabet) .transcribe( ) 
        return UnknownSeq(self._length,s.alphabet,self._character)

Clone Instance
2

Line Count
17

Source Line
1050

Source File

Bio/Seq.py

    def back_transcribe(self): 
        """Returns unknown DNA sequence from an unknown RNA sequence.

        >>> my_rna = UnknownSeq(20, character="N")
        >>> my_rna
        UnknownSeq(20, alphabet = Alphabet(), character = 'N')
        >>> print my_rna
        NNNNNNNNNNNNNNNNNNNN
        >>> my_dna = my_rna.back_transcribe()
        >>> my_dna
        UnknownSeq(20, alphabet = DNAAlphabet(), character = 'N')
        >>> print my_dna
        NNNNNNNNNNNNNNNNNNNN
        """ 
        #Offload the alphabet stuff
        s = Seq(self._character,self.alphabet) .back_transcribe( ) 
        return UnknownSeq(self._length,s.alphabet,self._character)

Clone Abstraction

Parameter Count: 2

Parameter Bindings

def [[#variable5044c7c0]](self):
   [[#variable5044c880]]
  #Offload the alphabet stuff
  s = Seq(self._character,self.alphabet). [[#variable5044c7c0]]( ) 
  return UnknownSeq(self._length,s.alphabet,self._character)

CloneAbstraction

Parameter Bindings
Parameter Index	Clone Instance	Parameter Name	Value
1	1	`[[#5044c7c0]]`	back_transcribe
1	2	`[[#5044c7c0]]`	transcribe
2	1	`[[#5044c880]]`	"""Returns unknown DNA sequence from an unknown RNA sequence. >>> my_rna = UnknownSeq(20, character="N") >>> my_rna UnknownSeq(20, alphabet = Alphabet(), character = 'N') >>> print my_rna NNNNNNNNNNNNNNNNNNNN >>> my_dna = my_rna.back_transcribe() >>> my_dna UnknownSeq(20, alphabet = DNAAlphabet(), character = 'N') >>> print my_dna NNNNNNNNNNNNNNNNNNNN """
2	2	`[[#5044c880]]`	"""Returns unknown RNA sequence from an unknown DNA sequence. >>> my_dna = UnknownSeq(10, character="N") >>> my_dna UnknownSeq(10, alphabet = Alphabet(), character = 'N') >>> print my_dna NNNNNNNNNN >>> my_rna = my_dna.transcribe() >>> my_rna UnknownSeq(10, alphabet = RNAAlphabet(), character = 'N') >>> print my_rna NNNNNNNNNN """