CloneSet48


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Clone
Mass
Clones in
CloneSet
Parameter
Count
Clone
Similarity
Syntax Category
[Sequence Length]
15460.965block
Clone AbstractionParameter Bindings
Clone Instance
(Click to see clone)
Line CountSource Line
Source File
11580
Bio/SeqIO/_convert.py
21496
Bio/SeqIO/_convert.py
314111
Bio/SeqIO/_convert.py
412126
Bio/SeqIO/_convert.py
Clone Instance
1
Line Count
15
Source Line
80
Source File
Bio/SeqIO/_convert.py

    """Fast Sanger FASTQ to Sanger FASTQ conversion (PRIVATE).

    Useful for removing line wrapping and the redundant second identifier
    on the plus lines. Will check also check the quality string is valid.

    Avoids creating SeqRecord and Seq objects in order to speed up this
    conversion.
    """ 
    #Map unexpected chars to null
    mapping = "".join([chr(0) for ascii in range(0,33)]+[chr(ascii) for ascii in range(33,127)]+[chr(0) for ascii in range(127,256)]) 


    assert len(mapping)==256 
    return _fastq_generic(in_handle,out_handle,mapping) 


Clone Instance
2
Line Count
14
Source Line
96
Source File
Bio/SeqIO/_convert.py

    """Fast Solexa FASTQ to Solexa FASTQ conversion (PRIVATE).

    Useful for removing line wrapping and the redundant second identifier
    on the plus lines. Will check also check the quality string is valid.
    Avoids creating SeqRecord and Seq objects in order to speed up this
    conversion.
    """ 
    #Map unexpected chars to null
    mapping = "".join([chr(0) for ascii in range(0,59)]+[chr(ascii) for ascii in range(59,127)]+[chr(0) for ascii in range(127,256)]) 


    assert len(mapping)==256 
    return _fastq_generic(in_handle,out_handle,mapping) 


Clone Instance
3
Line Count
14
Source Line
111
Source File
Bio/SeqIO/_convert.py

    """Fast Illumina 1.3+ FASTQ to Illumina 1.3+ FASTQ conversion (PRIVATE).

    Useful for removing line wrapping and the redundant second identifier
    on the plus lines. Will check also check the quality string is valid.
    Avoids creating SeqRecord and Seq objects in order to speed up this
    conversion.
    """ 
    #Map unexpected chars to null
    mapping = "".join([chr(0) for ascii in range(0,64)]+[chr(ascii) for ascii in range(64,127)]+[chr(0) for ascii in range(127,256)]) 


    assert len(mapping)==256 
    return _fastq_generic(in_handle,out_handle,mapping) 


Clone Instance
4
Line Count
12
Source Line
126
Source File
Bio/SeqIO/_convert.py

    """Fast Illumina 1.3+ FASTQ to Sanger FASTQ conversion (PRIVATE).

    Avoids creating SeqRecord and Seq objects in order to speed up this
    conversion.
    """ 
    #Map unexpected chars to null
    mapping = "".join([chr(0) for ascii in range(0,64)]+[chr(33+q) for q in range(0,62+1)]+[chr(0) for ascii in range(127,256)]) 


    assert len(mapping)==256 
    return _fastq_generic(in_handle,out_handle,mapping) 


Clone AbstractionParameter Count: 6Parameter Bindings

   [[#variable5d75bf00]]
  #Map unexpected chars to null
  mapping = "".join([chr(0) for ascii in range(0, [[#variable5cdd6be0]])]+[chr( [[#variable30589400]]) for [[#variable2f2aae60]]in range( [[#variable71ac3280]], [[#variable5d75bf40]])]+[chr(0) for ascii in range(127,256)]) 
  assert len(mapping)==256 
  return _fastq_generic(in_handle,out_handle,mapping) 
 

CloneAbstraction
Parameter Bindings
Parameter
Index
Clone
Instance
Parameter
Name
Value
11[[#5d75bf00]]
"""Fast Sanger FASTQ to Sanger FASTQ conversion (PRIVATE).

    Useful for removing line wrapping and the redundant second identifier
    on the plus lines. Will check also check the quality string is valid.

    Avoids creating SeqRecord and Seq objects in order to speed up this
    conversion.
    """ 
12[[#5d75bf00]]
"""Fast Solexa FASTQ to Solexa FASTQ conversion (PRIVATE).

    Useful for removing line wrapping and the redundant second identifier
    on the plus lines. Will check also check the quality string is valid.
    Avoids creating SeqRecord and Seq objects in order to speed up this
    conversion.
    """ 
13[[#5d75bf00]]
"""Fast Illumina 1.3+ FASTQ to Illumina 1.3+ FASTQ conversion (PRIVATE).

    Useful for removing line wrapping and the redundant second identifier
    on the plus lines. Will check also check the quality string is valid.
    Avoids creating SeqRecord and Seq objects in order to speed up this
    conversion.
    """ 
14[[#5d75bf00]]
"""Fast Illumina 1.3+ FASTQ to Sanger FASTQ conversion (PRIVATE).

    Avoids creating SeqRecord and Seq objects in order to speed up this
    conversion.
    """ 
21[[#5cdd6be0]]
33 
22[[#5cdd6be0]]
59 
23[[#5cdd6be0]]
64 
24[[#5cdd6be0]]
64 
31[[#30589400]]
ascii 
32[[#30589400]]
ascii 
33[[#30589400]]
ascii 
34[[#30589400]]
33+q 
41[[#2f2aae60]]
ascii 
42[[#2f2aae60]]
ascii 
43[[#2f2aae60]]
ascii 
44[[#2f2aae60]]
q 
51[[#71ac3280]]
33 
52[[#71ac3280]]
59 
53[[#71ac3280]]
64 
54[[#71ac3280]]
0 
61[[#5d75bf40]]
127 
62[[#5d75bf40]]
127 
63[[#5d75bf40]]
127 
64[[#5d75bf40]]
62+1