CloneSet57


Previous CloneSetNext CloneSetBack to Main Report
Clone
Mass
Clones in
CloneSet
Parameter
Count
Clone
Similarity
Syntax Category
[Sequence Length]
4660.969test_plus
Clone AbstractionParameter Bindings
Clone Instance
(Click to see clone)
Line CountSource Line
Source File
1418
Bio/Blast/Applications.py
24215
Bio/Emboss/Applications.py
34253
Bio/Emboss/Applications.py
44416
Bio/Emboss/Applications.py
54739
Bio/Emboss/Applications.py
64757
Bio/Emboss/Applications.py
Clone Instance
1
Line Count
4
Source Line
18
Source File
Bio/Blast/Applications.py

           _Option(["-d","database"],["input"],None,1,"The database to retrieve from."),_Option(["-s","search_string"],["input"],None,1,"The id to search for.")


Clone Instance
2
Line Count
4
Source Line
215
Source File
Bio/Emboss/Applications.py

          _Option(["-msf","msf"],["input"],None,1,"File containing sequences"),_Option(["-method","method"],["input"],None,1,"Choose the method to use")


Clone Instance
3
Line Count
4
Source Line
253
Source File
Bio/Emboss/Applications.py

          _Option(["-infile","infile"],["input"],None,1,"infile value"),_Option(["-trout","trout"],["input"],None,1,"Create a tree file")


Clone Instance
4
Line Count
4
Source Line
416
Source File
Bio/Emboss/Applications.py

         _Option(["-sequence","sequence"],["input"],None,1,"seq file to use (phylip)"),_Option(["-method","method"],["input"],None,1,"sub. model [f,k,j,l,s]")


Clone Instance
5
Line Count
4
Source Line
739
Source File
Bio/Emboss/Applications.py

         _Option(["-sequence","sequence"],["input"],None,1,"Sequence database USA"),_Option(["-pattern","pattern"],["input"],None,1,"Search pattern, using standard IUPAC one-letter codes")


Clone Instance
6
Line Count
4
Source Line
757
Source File
Bio/Emboss/Applications.py

         _Option(["-est","est"],["input"],None,1,"EST sequence(s)"),_Option(["-genome","genome"],["input"],None,1,"Genomic sequence")


Clone AbstractionParameter Count: 6Parameter Bindings

_Option([ [[#variable77a8ea60]], [[#variable77a8eaa0]]],["input"],None,1, [[#variable7d1068c0]]),_Option([ [[#variable50448200]], [[#variable50448e80]]],["input"],None,1, [[#variable77a8ea80]])
 

CloneAbstraction
Parameter Bindings
Parameter
Index
Clone
Instance
Parameter
Name
Value
11[[#77a8ea60]]
"-msf" 
12[[#77a8ea60]]
"-infile" 
13[[#77a8ea60]]
"-sequence" 
14[[#77a8ea60]]
"-sequence" 
15[[#77a8ea60]]
"-est" 
16[[#77a8ea60]]
"-d" 
21[[#77a8eaa0]]
"msf" 
22[[#77a8eaa0]]
"infile" 
23[[#77a8eaa0]]
"sequence" 
24[[#77a8eaa0]]
"sequence" 
25[[#77a8eaa0]]
"est" 
26[[#77a8eaa0]]
"database" 
31[[#7d1068c0]]
"File containing sequences" 
32[[#7d1068c0]]
"infile value" 
33[[#7d1068c0]]
"seq file to use (phylip)" 
34[[#7d1068c0]]
"Sequence database USA" 
35[[#7d1068c0]]
"EST sequence(s)" 
36[[#7d1068c0]]
"The database to retrieve from." 
41[[#50448200]]
"-method" 
42[[#50448200]]
"-trout" 
43[[#50448200]]
"-method" 
44[[#50448200]]
"-pattern" 
45[[#50448200]]
"-genome" 
46[[#50448200]]
"-s" 
51[[#50448e80]]
"method" 
52[[#50448e80]]
"trout" 
53[[#50448e80]]
"method" 
54[[#50448e80]]
"pattern" 
55[[#50448e80]]
"genome" 
56[[#50448e80]]
"search_string" 
61[[#77a8ea80]]
"Choose the method to use" 
62[[#77a8ea80]]
"Create a tree file" 
63[[#77a8ea80]]
"sub. model [f,k,j,l,s]" 
64[[#77a8ea80]]
"Search pattern, using standard IUPAC one-letter codes" 
65[[#77a8ea80]]
"Genomic sequence" 
66[[#77a8ea80]]
"The id to search for."