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| Clone Mass | Clones in CloneSet | Parameter Count | Clone Similarity | Syntax Category [Sequence Length] |
|---|---|---|---|---|
| 12 | 2 | 5 | 0.953 | stmt_list[5] |
| Clone Abstraction | Parameter Bindings |
| Clone Instance (Click to see clone) | Line Count | Source Line | Source File |
|---|---|---|---|
| 1 | 11 | 346 | Bio/SeqUtils/__init__.py |
| 2 | 12 | 46 | Scripts/xbbtools/xbb_translations.py |
| ||||
if length>20:
short = "%s ... %s"%(seq[ :10],seq[ -10: ])
else:
short = seq
#TODO? Remove the date as this would spoil any unit test...
date = time.strftime("%y %b %d, %X",time.localtime(time.time( )))
header = "GC_Frame: %s, "%date
for nt in ["a","t","g","c"]:
header+="%s:%d "%(nt,seq.count(nt.upper( )))
header+="""
Sequence: %s, %d nt, %0.2f %%GC
""" %(short.lower( ),length,GC(seq))
|
| ||||
if length>20:
short = "%s ... %s"%(seq[ :10],seq[ -10: ])
else:
short = seq
date = time.strftime("%y %b %d, %X",time.localtime(time.time( )))
res = "%s: %s, "%(txt,date)
for nt in ["a","t","g","c"]:
res+="%s:%d "%(nt,seq.count(nt.upper( )))
res+="""
Sequence: %s, %d nt, %0.2f %%GC
""" %(short.lower( ),length,self.gc(seq))
|
| |||
if length>20:
short = "%s ... %s"%(seq[ :10],seq[ -10: ])
else:
short = seq
#TODO? Remove the date as this would spoil any unit test...
date = time.strftime("%y %b %d, %X",time.localtime(time.time( )))
[[#variable2f9fab40]]= [[#variable2f9fafe0]]% [[#variable2f9fafc0]]
for nt in ["a","t","g","c"]:
[[#variable2f9fab40]]+="%s:%d "%(nt,seq.count(nt.upper( )))
[[#variable2f9fab40]]+= [[#variable2f9fa520]]%(short.lower( ),length, [[#variable78a55860]](seq))
|
| CloneAbstraction |
| Parameter Index | Clone Instance | Parameter Name | Value |
|---|---|---|---|
| 1 | 1 | [[#2f9fab40]] | res |
| 1 | 2 | [[#2f9fab40]] | header |
| 2 | 1 | [[#2f9fafe0]] | "%s: %s, " |
| 2 | 2 | [[#2f9fafe0]] | "GC_Frame: %s, " |
| 3 | 1 | [[#2f9fafc0]] | (txt,date) |
| 3 | 2 | [[#2f9fafc0]] | date |
| 4 | 1 | [[#2f9fa520]] | """ Sequence: %s, %d nt, %0.2f %%GC """ |
| 4 | 2 | [[#2f9fa520]] | """ Sequence: %s, %d nt, %0.2f %%GC """ |
| 5 | 1 | [[#78a55860]] | self.gc |
| 5 | 2 | [[#78a55860]] | GC |