CloneSet175


Previous CloneSetNext CloneSetBack to Main Report
Clone
Mass
Clones in
CloneSet
Parameter
Count
Clone
Similarity
Syntax Category
[Sequence Length]
8240.984or_test
Clone AbstractionParameter Bindings
Clone Instance
(Click to see clone)
Line CountSource Line
Source File
18187
Bio/Align/Applications/_Clustalw.py
28229
Bio/Align/Applications/_Clustalw.py
Clone Instance
1
Line Count
8
Source Line
187
Source File
Bio/Align/Applications/_Clustalw.py

            # ***Slow Pairwise Alignments:***
            _Option(["-pwmatrix","-PWMATRIX","PWMATRIX","pwmatrix"],["input"],

                    lambda x:x in ["BLOSUM","PAM","GONNET","ID","blosum","pam","gonnet","id"] or

                                   os.path.exists(x),False,"Protein weight matrix=BLOSUM, PAM, GONNET, ID or filename",True)


Clone Instance
2
Line Count
8
Source Line
229
Source File
Bio/Align/Applications/_Clustalw.py

            _Option(["-matrix","-MATRIX","MATRIX","matrix"],["input"],

                    lambda x:x in ["BLOSUM","PAM","GONNET","ID","blosum","pam","gonnet","id"] or

                                   os.path.exists(x),False,"Protein weight matrix=BLOSUM, PAM, GONNET, ID or filename",True)


Clone AbstractionParameter Count: 4Parameter Bindings

# ***Slow Pairwise Alignments:***
_Option([ [[#variable71b1c780]], [[#variable71b1c720]], [[#variable71b1c6a0]], [[#variable71b1c640]]],["input"], lambda x:x in ["BLOSUM","PAM","GONNET","ID","blosum","pam","gonnet","id"] or os.path.exists(x),False,"Protein weight matrix=BLOSUM, PAM, GONNET, ID or filename",True)
 

CloneAbstraction
Parameter Bindings
Parameter
Index
Clone
Instance
Parameter
Name
Value
11[[#71b1c780]]
"-matrix" 
12[[#71b1c780]]
"-pwmatrix" 
21[[#71b1c720]]
"-MATRIX" 
22[[#71b1c720]]
"-PWMATRIX" 
31[[#71b1c6a0]]
"MATRIX" 
32[[#71b1c6a0]]
"PWMATRIX" 
41[[#71b1c640]]
"matrix" 
42[[#71b1c640]]
"pwmatrix"