CloneSet349


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Clone
Mass
Clones in
CloneSet
Parameter
Count
Clone
Similarity
Syntax Category
[Sequence Length]
7230.972compound_stmt
Clone AbstractionParameter Bindings
Clone Instance
(Click to see clone)
Line CountSource Line
Source File
1730
Bio/SeqIO/_convert.py
2738
Bio/SeqIO/_convert.py
Clone Instance
1
Line Count
7
Source Line
30
Source File
Bio/SeqIO/_convert.py

#NOTE - Lots of lazy imports further on...
def _genbank_convert_fasta(in_handle,out_handle,alphabet = None): 
    "Fast GenBank to FASTA (PRIVATE)." 
    #We don't need to parse the features...
    from Bio.GenBank.Scanner import GenBankScanner 
    records = GenBankScanner( ).parse_records(in_handle,do_features = False) 
    #For FASTA output we can ignore the alphabet too
    return SeqIO.write(records,out_handle,"fasta") 


Clone Instance
2
Line Count
7
Source Line
38
Source File
Bio/SeqIO/_convert.py

def _embl_convert_fasta(in_handle,out_handle,alphabet = None): 
    "Fast EMBL to FASTA (PRIVATE)." 
    #We don't need to parse the features...
    from Bio.GenBank.Scanner import EmblScanner 
    records = EmblScanner( ).parse_records(in_handle,do_features = False) 
    #For FASTA output we can ignore the alphabet too
    return SeqIO.write(records,out_handle,"fasta") 


Clone AbstractionParameter Count: 3Parameter Bindings

#NOTE - Lots of lazy imports further on...
def [[#variable78125160]](in_handle,out_handle,alphabet = None):
   [[#variable78125100]]
  #We don't need to parse the features...
  from Bio.GenBank.Scanner import [[#variable781250a0]]
  records = [[#variable781250a0]]( ).parse_records(in_handle,do_features = False) 
  #For FASTA output we can ignore the alphabet too
  return SeqIO.write(records,out_handle,"fasta") 
 

CloneAbstraction
Parameter Bindings
Parameter
Index
Clone
Instance
Parameter
Name
Value
11[[#78125160]]
_embl_convert_fasta 
12[[#78125160]]
_genbank_convert_fasta 
21[[#78125100]]
"Fast EMBL to FASTA (PRIVATE)." 
22[[#78125100]]
"Fast GenBank to FASTA (PRIVATE)." 
31[[#781250a0]]
EmblScanner 
32[[#781250a0]]
GenBankScanner