CloneSet70


Clone Mass	Clones in CloneSet	Parameter Count	Clone Similarity	Syntax Category [Sequence Length]
20	3	1	0.997	file_input_element_list[2]

Clone Abstraction

Parameter Bindings

Clone Instance (Click to see clone)	Line Count	Source Line	Source File
1	19	445	Bio/AlignIO/__init__.py
2	19	497	Bio/Clustalw/__init__.py
3	20	137	Bio/Motif/__init__.py

Clone Instance
1

Line Count
19

Source Line
445

Source File

Bio/AlignIO/__init__.py

def _test( ):
            
    """Run the Bio.AlignIO module's doctests.

    This will try and locate the unit tests directory, and run the doctests
    from there in order that the relative paths used in the examples work.
    """ 
    import doctest 
    import os 
    if os.path.isdir(os.path.join("..","..","Tests")): 
        print "Runing doctests..." 
        cur_dir = os.path.abspath(os.curdir) 
        os.chdir(os.path.join("..","..","Tests")) 
        doctest.testmod( ) 
        os.chdir(cur_dir) 
        del cur_dir 
        print "Done" 
    
if __name__=="__main__":   
    _test( )

Clone Instance
2

Line Count
19

Source Line
497

Source File

Bio/Clustalw/__init__.py

def _test( ):
            
    """Run the Bio.Clustalw module's doctests (PRIVATE).

    This will try and locate the unit tests directory, and run the doctests
    from there in order that the relative paths used in the examples work.
    """ 
    import doctest 
    import os 
    if os.path.isdir(os.path.join("..","..","Tests")): 
        print "Runing doctests..." 
        cur_dir = os.path.abspath(os.curdir) 
        os.chdir(os.path.join("..","..","Tests")) 
        doctest.testmod( ) 
        os.chdir(cur_dir) 
        del cur_dir 
        print "Done" 
    
if __name__=="__main__":  
    _test( )

Clone Instance
3

Line Count
20

Source Line
137

Source File

Bio/Motif/__init__.py

def _test( ):
            
    """Run the Bio.Motif module's doctests.

    This will try and locate the unit tests directory, and run the doctests
    from there in order that the relative paths used in the examples work.
    """ 
    import doctest 
    import os 
    if os.path.isdir(os.path.join("..","..","Tests")): 
        print "Runing doctests..." 
        cur_dir = os.path.abspath(os.curdir) 
        os.chdir(os.path.join("..","..","Tests")) 
        doctest.testmod( ) 
        os.chdir(cur_dir) 
        del cur_dir 
        print "Done" 
    
if __name__=="__main__":  
    #Run the doctests
    _test( )

Clone Abstraction

Parameter Count: 1

Parameter Bindings

def _test( ):
   [[#variable60ce95e0]]
  import doctest 
  import os 
  if os.path.isdir(os.path.join("..","..","Tests")):
  
    print "Runing doctests..." 
    cur_dir = os.path.abspath(os.curdir) 
    os.chdir(os.path.join("..","..","Tests")) 
    doctest.testmod( ) 
    os.chdir(cur_dir) 
    del cur_dir 
    print "Done" 
  
if __name__=="__main__":
  #Run the doctests
  _test( )

CloneAbstraction

Parameter Bindings
Parameter Index	Clone Instance	Parameter Name	Value
1	1	`[[#60ce95e0]]`	"""Run the Bio.Motif module's doctests. This will try and locate the unit tests directory, and run the doctests from there in order that the relative paths used in the examples work. """
1	2	`[[#60ce95e0]]`	"""Run the Bio.Clustalw module's doctests (PRIVATE). This will try and locate the unit tests directory, and run the doctests from there in order that the relative paths used in the examples work. """
1	3	`[[#60ce95e0]]`	"""Run the Bio.AlignIO module's doctests. This will try and locate the unit tests directory, and run the doctests from there in order that the relative paths used in the examples work. """